G4X data

Output reference and analysis import guides.

The G4X produces multi-modal output containing tables, images, arrays and annotated matrices for single-cell analysis. The files found in the output directory are compatible with popular Python libraries from the scverse ecosystem, like scanpy, rapids-singlecell, squidpy, spatial-data ... and, if you prefer working in R, can be easily imported into Seurat.

In this section you will find:

• details on the G4X output files and their organization
• guides on importing G4X data into popular analysis tools in Python and R

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