--tar_viewer

Package G4X-Viewer Folder for Distribution

Tars a G4X-Viewer folder by validating and organizing key viewer assets (e.g., .bin, .ome.tiff, .tar, etc.), generating the required dataset.config.json metadata file, and creating a .tar archive ready for use with the Single-File upload option in the G4X-Viewer.

usage

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$ tar_viewer --viewer_dir /path/to/g4x_viewer_folder

argument description

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--viewer_dir: (type: str)

Path to the G4X-Viewer folder that contains the data and metadata to be packaged. This folder must contain: - A single .bin file - A {sample_id}.ome.tiff image file - A {sample_id}_run_metadata.json file - A {sample_id}.tar transcript file - A {sample_id}_HE.ome.tiff file (H&E), which will be moved into a subdirectory h_and_e/